GENOME DATA | WEB ACCESS |
Oak genome assembly PM1N
(haploid version: 12 pseudomolecules with 871 scaffolds + 538 unassigned scaffolds) |
https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N.fa.gz |
Oak genome assembly V2_2N
(diploid version 2) |
https://urgi.versailles.inra.fr/download/oak/Qrob_V2_2N.fa |
Oak genome assembly V1_2N
(diploid version 1 from Plomion et al. 2016 Mol Ecol Res 16: 254-265) |
https://urgi.versailles.inra.fr/download/oak/Qrob_V1_2N.fa |
Oak transcriptome
(de novo assembly) |
https://urgi.versailles.inra.fr/download/oak/OCV4_assembly_final.fsa |
Oak protein-coding sequences predicted on PM1N
(haploid version) |
CDS (aa): https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N_CDS_aa_20161004.fa
CDS (nt): https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N_CDS_nt_20161004.fa |
GFF files |
Gene prediction: https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N_genes_20161004.gff.gz
Transposable elements: https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N_refTEs.gff.gz
Initial gene catalog (43,755 predicted genes): https://urgi.versailles.inra.fr/download/oak/Qrob_PM1N_genes_20151214_43755.gff.zip
|
Vcf files (somatic mutations and heterozygozity) | Candidate_somatic_mutations.zip (README) |
Intermediate genome assemblies | Newbler_assembly_A3.fa.zip |
Bash scripts (Estimation of heterozygosity of the reference genotype ā3Pā) | scripts_3P.zip |